Users can also filter the dataset down to only include AKI, CKD, or healthy reference samples - this updates the gene feature plot and the table (but not the reference UMAP image).
CONVERT IMAGE FORMAT ATLAS FULL
Searching for a gene presents the user with various visualizations and data tables displaying how the gene is expressed in the selected data type.Ĭhoosing the single-nucleus or single-cell RNA-seq data types yields a visualization page with a "reference UMAP" showing how the full dataset was clustered as well as the inferred cell type/state of each cluster (see this preprint for more details on the clustering and cell attribution methods) a feature plot showing the expression of the selected gene, and a table detailing the expression of the selected gene in each cluster (compared to all other clusters) (Figure 1). The Atlas Explorer allows users to search by genes, cell types, or supported technologies and see the associated data. The cell types and anatomical structures are also being represented in the Cell Ontology and Uberon, respectively. The HuBMAP ASCT+B Reporter tool can be used to visualize the anatomical structures, cell types, and biomarkers (ASCT+B) authored by the domain experts. The cell types noted in the application were established as a joint effort with the HuBMAP Consortium. The single-nucleus and single-cell datasets are described in detail in this preprint (Note: the v1.0 Atlas Explorer includes only a subset of the samples described) the manuscript also details the approach to assigning cell types to the clustered data. Participants in Atlas Explorer for each data typeĪ summary of the data available in the Atlas Explorer is available on the Kidney Tissue Atlas homepage. The following data types have been incorporated into the Atlas Explorer: Just double-click and easily create content. The rich text element allows you to create and format headings, paragraphs, blockquotes, images, and video all in one place instead of having to add and format them individually. Headings, paragraphs, blockquotes, figures, images, and figure captions can all be styled after a class is added to the rich text element using the "When inside of" nested selector system.
CONVERT IMAGE FORMAT ATLAS HOW TO
Voila! How to customize formatting for each rich text For dynamic content, add a rich text field to any collection and then connect a rich text element to that field in the settings panel. For static content, just drop it into any page and begin editing. Static and dynamic content editingĪ rich text element can be used with static or dynamic content.
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